hominis. Abbreviation List: this website + Positive; – Negative; W+ weakly positive; CAT-Catalase; OXI-Oxidase; DARA–D-Arabinose; RIB–Ribose; DXYL–D-Xylose; RHA–L-Rhamnose; NAG–N-AcetylGlucosamine;MEL–D-Mellibiose; TRE–D-Trehalose; INU–Inulin; AMD–Amidon; GLYG–Glycogen; GEN–Gentiobiose; DFUC–D-Fucose; PYRA–Pyroglutamic acid-β-naphthylamide; GUR–Naphthol ASBI-glucuronic acid; GEL–Gelatin (Strictly anaerobic); O–Negative control. Table 2 Antibiotic susceptibility testing of M. yannicii PS01 with closely related species Antibiotic Abr. CFM.yannicii M.yannicii M.trichothecenolyticum M.flavescens M.hominis Fosfomycin FOS50 7/R 7/R 7/R 7/R
7/R Chloramphenicol C30 S S S 16/S 24/S Doxycycline D30 S S S 7/R 7/R Erythromycin E15 7/R S S 7/R 34/S Vancomycin VA S S S 20/S 14/R Clindamycin CM5 8/R S 12/R 7/R 7/R Oxacillin OX5 20/S S 7/R 7/R 7/R Rifampicin RA30 S S 24/S 28/S 20/S Colistin CT50 30/S 20/S 20/S 12/R 10/R Gentamicin GM15 12/R 10/R 14/R 7/R 10/R Tobramycin TM10 7/R
7/R 7/R 7/R 7/R Ciprofloxacine CIP5 7/R 15/R 12/R 7/R 20/S Ofloxacine OFX5 7/R 11/R 10/R 7/R 7/R Trimethoprim-Sulfamethoxazole SXT 7/R 31/S 24/S S S Amoxicillin AX25 S S S S 20/S Imipenem IMP10 S S S S S PD0332991 mw Ceftazidime CAZ30 S 7/R 7/R 7/R 16/S Ticarcilline TIC75 S S 7/R 7/R 12/R Cefoxitin FOX30 S 20/S 7/R 16/S 26/S Ceftriaxone CRO30 S S 24/S 7/R S Amoxicillin-Clavulinic acid AMC30 S S S S S Antibiotic susceptibility testing of CF clinical M. yannicii PS01 isolate and M. yannicii DSM 23203, M. flavescens, M. trichothecenolyticum
and M. hominis reference strains. S sensitive, R resistant, Numbers given in selleck mm. Genotypic features The 16S rRNA sequence of our isolate Strain PS01 showed 98.8% similarity with Microbacterium yannicii G72T strain (DSM23203) (GenBank accession number FN547412), 98.7% with Microbacterium trichothecenolyticum, and 98.3% similarity with both Microbacterium flavescens and Microbacterium hominis. Based on 16S rRNA full length gene sequence (1510 bp), our isolate was identified as Microbacterium Forskolin ic50 yannicii. Partial rpoB sequences (980 bp) as well as partial gyrB sequences were also determined for the four strains and a concatenated phylogenetic tree was constructed to show the phylogenetic position of CF Microbacterium yannicii PS01 (Figure 2). Figure 2 Concatenated phylogenetic tree of Microbacterium species using NJ method. Concatenated phylogenetic tree based on 16SrRNA-rpoB-gyrB sequence highlighting the phylogenetic position of CF Microbacterium yannicii PS01. Corynebacterium diphtheriae was used as an out group. Sequences were aligned using CLUSTALX and Phylogenetic inferences obtained using Neighbor joining method within Mega 5 software. Bootstrap values are expressed by percentage of 1000 replicates with Kimura 2 parameter test and shown at the branching points. The branches of the tree are indicated by the genus and species name of the type strains followed by the NCBI Gene accession numbers: a: 16SrRNA; b: rpoB; c: gyrB.