The stained slides were analyzed with a Leica Microscope at 1000× magnification. Pure bacterial clones were stored at −80 °C. Bacterial genome DNA was isolated by applying DNA Mini and Blood Mini

Kit from Qiagen (Hilden, Germany). Freshly subcultured single colonies were harvested with sterile wooden stick cotton swaps and resuspended in PBS. After centrifugation, the pellet was lysed in lysis buffer containing proteinase K provided by the manufacturer. In case of Gram-positive Selleckchem Navitoclax bacteria, lysozyme (20 mg mL−1) was added as recommended by the manufacturer. In brief, the bacterial DNA was isolated by adhering to silicate in mini columns and eluted with water after washing with an ethanol-containing solution. The DNA concentration was measured AZD2281 datasheet with a Nanodrop photometric apparatus (Peqlab, Erlangen, Germany). Purified bacterial genomic DNA was used to amplify a fragment of 1500 bp of the 16S rRNA gene by polymerase chain reaction (PCR) with the forward primer 8F 5′-AGAGTTTGATCCTGGCTCAG-3′ (Galkiewicz & Kellogg, 2008)

and reverse primer DG74 5′-AGGAGGTGATCCAACCGCA-3′ (Greisen et al., 1994) (Eurofins, Ebersberg, Germany). The PCR (25 μL) contained 1 U Dream Taq DNA Polymerase (Fermentas, St. Leon-Roth, Germany), 1× Dream Taq Buffer, 0.5 mM dNTPs, 0.15 μM forward and reverse primer, and 30–50 ng genomic DNA. The PCR mixture was subjected to an initial denaturation step of 5 min at 95 °C, followed by 35 cycles of denaturation for 30 s at 95 °C, annealing for 30 s at 52 °C,

and extension of 2 min at 72 °C, and a final extension of 10 min at 72 °C in a Peltier Thermal Cycler PTC-200 (BioRad, Vienna, Austria). The amplification product was visualized by agarose gel electrophoresis (1% agarose in 1× TAE-buffer (40 mM Tris, 20 mM sodium acetate, 1 mM EDTA, pH 8.0)). Midori green (Fermentas) Adenosine triphosphate stained DNA bands (1.5 kb) were excised under a 360-nm UV light box and purified with the NucleoSpin Extract II Kit (Macherey-Nagel, Dueren, Germany). The sequencing of both strands of the amplified 16S rRNA gene was run by Eurofins sending 150 ng of the purified PCR product. The quality of the obtained sequence was checked by screening the chromatogram of each read. The complete sequence was then compared to the DNA databases using the program blast (http://www.ncbi.nlm.nih.gov). Sequence alignments with the highest score were investigated for identifying the bacterial strain by specific 16S rRNA gene sequence. The total bacterial count of each pork meat juice sample is summarized in Table 1 ranging from 104 to 108 CFU mL−1 after 6 h storage at 4 °C. Only 30% of the analyzed samples reached a bacterial load between 107 and 108 CFU mL−1. The results did not reveal any differences between the bacterial count of juice from VP pork meat and in air stored ones.